species:   Rhsol
pid:       PID1786
parent:    novel-milR-55
paralog:   
locus:     KB317699.1:1029119-1029203
matures:   ['AAUGUUCCAAGAAGCUCAAAGCCC', 'CCUGGUCAUUGUGGAUAGCUUU']
srr:       SRR10747098
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.GCA_000334115.1_Rhisol_AG1IA_1.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747098.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747098.cram KB317699.1:1029119-1029203

5 out of bounds
6 alignments
6 proper strand
6 stranded perfect matches

       ************************                    **************************        
CAAUUCCAUCCUGGUCAUUGUGGAUAGCUUUACCAAGUAUGUCAUCCUGGUAGAAUGUUCCAAGAAGCUCAAAGCCCUGGAAUUG
((((((((..(((((..(((.(((((..(((((((.(........).))))))).))))))))...)))...))...))))))))
-----------------------------------------------------AAUGUUCCAAGAAGCUCAAAGCCC-------- l=24 a=2 c
---------CCUGGUCAUUGUGGAUAGCUUU------------------------------------------------------ l=22 a=0 c*
-----------------------------------------------------AAUGUUCCAAGAAGCUCAAAGCCC-------- l=24 a=2 ma
---------CCUGGUCAUUGUGGAUAGCUUU------------------------------------------------------ l=22 a=0 ma*

-----------------------------------------UCAUCCUGGUAGAAUGUUCCAAGA-------------------- l=24 a=1 
----------------------------------------------CUGGUAGAAUGUUCCAAGAAGCU---------------- l=23 a=1 
--------------------------------------------------UAGAAUGUUCCAAGAAGCUCAAAGCCCU------- l=28 a=1 
---------------------------------------------------AGAAUGUUCCAAGAAGCUCAAAGCCC-------- l=26 a=1 
-----------------------------------------------------AAUGUUCCAAGAAGCUCAAAGCCC-------- l=24 a=2 (c,ma)

mb-01011
ax-1001011
ku-01
ss-101111101100
fn-011
